PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09413.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 281aa    MW: 31053.7 Da    PI: 8.1162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09413.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.6e-1676122455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+ Y+ksLq
  KHN09413.1  76 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAISYLKSLQ 122
                 6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011013.061196IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23006.7E-12251No hitNo description
SuperFamilySSF521723.98E-11352IPR011006CheY-like superfamily
PfamPF000721.1E-7450IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.38E-9550No hitNo description
Gene3DG3DSA:4.10.280.109.0E-2169130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-2170138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.07672121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.97E-1775126No hitNo description
PfamPF000101.7E-1376122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-1878127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
EMVHRKMLNS VGLKIQVAEN GKEAVEIHRS GQSFDLILMD RDMPVMNGIE DVDFESEAKK  60
QVCGSTSTKR SRAAEVHNLS ERRRRDRINE KMKALQELIP RCNKSDKASM LDEAISYLKS  120
LQLQVQMMSM GCGMVPMMFP GIQQYMPAMG MGVGMGMGME MGMNRPVMPF PNMLPGSALP  180
AATAAAAHLG PRFSMPPFHM PHVPAPDSSR MQAANQSDNN MVTSAGPPDP NQSRIPNFTD  240
PYQQYLGPHQ MQFQLIQNQA MNQPNVSKPS NNGGPANPEN H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311020.0KT031102.1 Glycine max clone HN_CCL_196 bHLH transcription factor (Glyma03g32747.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521328.11e-168PREDICTED: transcription factor PIF1-like isoform X1
RefseqXP_006576978.11e-168PREDICTED: transcription factor PIF1-like isoform X1
SwissprotQ8GZM72e-54PIF1_ARATH; Transcription factor PIF1
TrEMBLA0A0B2PP350.0A0A0B2PP35_GLYSO; Transcription factor PIF1 (Fragment)
STRINGGLYMA03G32747.11e-168(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.14e-43phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]